GeneTraffic Software

GeneTraffic is a web-based microarray data analysis and management software developed by Iobion Informatics that allows users to log onto a server, upload their microarray data and perform analysis and project management remotely. GeneTraffic® was made by Iobion® Informatics (now under Stratagene) and can be accessed thorough Internet Explorer 6.0 or greater on Windows XP.

     GeneTraffic DUO. (Maintenance complete Dec. 17,2009)

For two-colour/CDMC array users, GeneTraffic supports quantified microarray data files from GenePix, Imagene, ScanArray, QuantArray, ScanAlyze, Scanalytics, Lucidea Automated Spotfinder and ArrayVision as well as native scanned 16-bit TIFF files.

     GeneTraffic UNO

For Affymetrix users, GeneTraffic requires CEL and CHP files. EXP, RPT, DAT, DCP files are optional and not required. For additional details on Duo or Uno features please review GeneTraffic® Duo or Uno manual respectively.

NOTE:
For CDMC array users, in addition to the two 16-bit TIFF image files and image quantification file (e.g., QuantArray or GAL) associated with each scanned microarray, you will also need:

The files described above (a-c) are available on our Downloads page.

GeneTraffic Registration

To Set up a GeneTraffic account, please fill out our online registration form.                                                                                                                         

 GeneTraffic Client Training

Demos and tutorials for GeneTraffic® Duo and Uno can be found at the Iobion® website .

MANUALS:
      GeneTraffic User Manuals (you must have Adobe Acrobat installed)
      ·  GeneTraffic Duo Manual (7.4Mb June 2004) -- Instructions for 2-colour/CDMC analysis

      ·  GeneTraffic Uno Manual (6.9Mb June 2004) -- Instructions for 1-colour/Affymetrix analysis

VIDEO:

     a)  Introduction to GeneTraffic (14 min.)

     b) GeneTraffic® Duo

                      ·  DUO Key Concepts & Two-Color Microarray Project Organization (11 min.)

                      ·  Creating Two-Color Projects (38 min.)

                      ·  Navigating DUO (16 min.)

                      ·  Normalization & Data Flagging (12 min.)

                      ·  Data Management and Analysis (25min.)

     c)  Data Management in GeneTraffic (25 min)

     d)  Data and Project Management in GeneTraffic (22 min)

GUIDES:

      Genetraffic Duo annotation guide and overview of analysis from the CDMC by Z.Razak:
                      ·  Genetraffic Annotation Guide - loading and annotating project in Genetraffic Duo
                      ·  Genetraffic Duo Analysis overview

GeneTraffic Client Minimum Hardware Requirements